CT Lab

Chapter 15: Magnetization & Relaxation

The MRI part begins: tip the magnetization with RF pulses and experience T1/T2 relaxation and the FID in simulation.

Welcome to the MRI part. The X-ray CT of the previous chapters counts photons transmitted through the body and measures line integrals of the attenuation coefficient μ\mu. MRI (magnetic resonance imaging) measures something entirely different: the faint signal emitted by the magnetization of hydrogen nuclei (protons) sitting in a strong static magnetic field after being shaken by radio-frequency (RF) pulses. There is no ionizing radiation, and tissue contrast comes not from μ\mu but from the time constants T1 and T2 introduced in this chapter, together with proton density.

What CT and MRI actually measure

CT measures the logarithm of transmitted intensity, i.e. line integrals, and images the attenuation coefficient μ(x,y)\mu(x,y). MRI measures the voltage induced in a coil, and images the spatial distribution of transverse magnetization Mxy(x,y)M_{xy}(x,y). Despite this difference, the mathematics of going from measurements back to an image will again reduce to the Fourier transform, as the next chapter shows.

Nuclear magnetization and Larmor precession

A hydrogen nucleus carries spin and behaves like a tiny magnet. In a static field B0B_0 the individual spin orientations are nearly random, but a slight Boltzmann bias (on the order of a few per million) produces a net magnetization M0M_0 along B0B_0. This macroscopic magnetization is the source of every MRI signal.

Tip the magnetization away from B0B_0 and it precesses around the field like a spinning top, at an angular frequency proportional to the field strength:

ω0=γB0\omega_0 = \gamma B_0

The constant γ\gamma is the gyromagnetic ratio; for protons γ/2π=42.58\gamma/2\pi = 42.58 MHz/T. At 1.5 T this is about 64 MHz, at 3 T about 128 MHz — the MRI "signal" lives in roughly the FM-radio band.

RF excitation and the rotating frame

At thermal equilibrium the magnetization points along B0B_0 (the zz axis) and cannot be detected. We therefore apply a magnetic field B1B_1 oscillating at the Larmor frequency (an RF pulse) from a transverse direction. On resonance, viewed from a frame rotating at ω0\omega_0, the precession appears to stop and the magnetization simply tips slowly around B1B_1. The tip angle (flip angle) is set by when the pulse is switched off: a 90° pulse puts the magnetization fully into the transverse plane, a 180° pulse inverts it.

Laboratory frameB₀ω₀ = γB₀MRotating frame (at ω₀)zx′y′B₁MB₁ tips M down

In the laboratory frame, M precesses about B₀ at ω₀ = γB₀ (left). In a frame rotating at ω₀ the precession disappears, leaving only the slow tip-down driven by B₁ (right).

The transverse magnetization MxyM_{xy} rotates at the Larmor frequency in the laboratory frame. A rotating magnet near a coil induces a voltage (Faraday's law) — and that voltage is the measured MRI signal.

The Bloch equations and relaxation

Tipped magnetization returns to equilibrium through two independent processes, described phenomenologically by the Bloch equations. In the rotating frame they separate into two lines:

dMzdt=M0MzT1,dMxydt=MxyT2\frac{dM_z}{dt} = \frac{M_0 - M_z}{T_1}, \qquad \frac{dM_{xy}}{dt} = -\frac{M_{xy}}{T_2}

T1 (longitudinal relaxation) is the time constant with which spins hand energy to the lattice (their molecular surroundings) and MzM_z recovers. T2 (transverse relaxation) is the time constant with which spin–spin interactions randomize the phases, destroying the vector sum of the transverse magnetization. No energy is lost — only alignment — so T2T1T_2 \le T_1 always holds.

T1 longitudinal recoverytMzM₀T₁63%Mz = M₀(1 − e^(−t/T₁))T2 transverse decayt|Mxy|T₂37%e^(−t/T₂)T₂*

The two relaxation time constants. Longitudinal magnetization Mz recovers with T1 (63% at t = T1); transverse magnetization |Mxy| decays with T2 (37% at t = T2). With B0 inhomogeneity the effective decay T2* is even faster.

The large tissue-to-tissue differences in these two time constants are the source of MRI contrast. At 1.5 T, cerebrospinal fluid (CSF) has T1 ≈ 4000 ms and T2 ≈ 2000 ms, white matter T1 ≈ 590 ms and T2 ≈ 80 ms, fat T1 ≈ 250 ms and T2 ≈ 60 ms. Recall that in CT the μ\mu of water and soft tissue differed by only a few percent — these differences are enormous by comparison. Which difference ends up in the image is chosen by the acquisition parameters (Chapter 17).

Simulation: the magnetization vector and relaxation

Press "90° pulse" to tip the magnetization into the transverse plane and watch MzM_z recover with T1 while Mxy|M_{xy}| decays with T2. Try setting T1 and T2 to tissue values — CSF and fat live on completely different time scales. A 180° pulse inverts the magnetization, and MzM_z recovers from M0-M_0 (inversion recovery). You can also see what repeated small flip angles do.

Magnetization vector M (rotating frame)

z (B₀)x′y′M

Mz and |Mxy| over time

00.20.40.60.81-1-0.8-0.6-0.4-0.200.20.40.60.81time [s]magnetization (M0 = 1)
Mz (longitudinal)|Mxy| (transverse)

Magnetization tipped by an RF pulse returns to thermal equilibrium via T1 and T2. Right after a 90° pulse, Mz = 0 and |Mxy| = 1. Changing T1 and T2 changes the recovery and decay rates; adding off-resonance makes M spiral about the z axis as it shrinks.

The FID and T2*

The signal induced in the coil right after a 90° pulse is called the free induction decay (FID). Ideally it would decay with T2, but in practice it vanishes faster: the static field B0B_0 is never perfectly uniform, so the Larmor frequency varies slightly from place to place and the phases fan out. The time constant of this apparent decay is written T2*:

1T2=1T2+1T2\frac{1}{T_2^*} = \frac{1}{T_2} + \frac{1}{T_2'}

where T2T_2' is the contribution of the field inhomogeneity. The key point is that the T2T_2' dephasing is static, and therefore reversible: invert the phases with a 180° pulse and the spins that were running ahead now lag behind and catch up, and the signal returns as an echo (the spin echo, Chapter 17).

Simulation: FID and T2*

Forty-eight isochromats with slightly different frequencies fan out after a 90° pulse. Confirm that the net signal (the FID) drops faster than the reference curve of true T2 decay, and that increasing the B0 inhomogeneity shortens T2*. Press "180° pulse" mid-decay and the fan folds back: the signal returns as an echo at twice the time of the pulse.

Isochromat fan (top view of the transverse plane)

Net signal (FID)

05010015020025030035040000.20.40.60.81time [ms]signal (relative)
net |Mxy| (FID)true T2 decay e^(−t/T2)

FID of tissue with B0 inhomogeneity. Each isochromat (thin line) precesses at a slightly different frequency, so the fan spreads and the net signal (thick line) decays faster than the true T2 (this is T2*). A 180° pulse folds the fan back and the signal returns as an echo.

Key points

The MRI signal comes from the macroscopic magnetization of protons in a static field. It precesses at the Larmor frequency ω0=γB0\omega_0 = \gamma B_0 and can be tipped to any angle by a resonant RF pulse. Tipped magnetization returns to equilibrium with T1 (longitudinal) and T2 (transverse), and the tissue differences in these constants are the source of contrast. B0 inhomogeneity produces the faster apparent decay T2*, whose static part can be rewound by a 180° pulse. But so far the signal carries no information about where it came from. Encoding position is the job of gradient fields and k-space — the next chapter.

References

  • Bloch F. Nuclear Induction. Physical Review 70, 460–474 (1946).
  • Hahn EL. Spin Echoes. Physical Review 80, 580–594 (1950).
  • Nishimura DG. Principles of Magnetic Resonance Imaging. Stanford University (2010).
  • McRobbie DW et al. MRI from Picture to Proton, 3rd ed. Cambridge University Press (2017).

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